Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter | RT97_18615 | Not Available | Positive | 4008084 - 4008887 | 30617.1 |
| sugar abc transporter atp-binding protein | RT97_18620 | Not Available | Positive | 4008891 - 4009595 | 25000.5 |
| group 1 glycosyl transferase | RT97_18625 | Not Available | Negative | 4009596 - 4011461 | 69450.3 |
| hypothetical protein | RT97_18635 | Not Available | Negative | 4013652 - 4016156 | 93111.3 |
| gdp-d-mannose dehydratase | RT97_18640 | Not Available | Negative | 4016263 - 4017300 | 38776.5 |
| cephalosporin hydroxylase | RT97_18645 | Not Available | Negative | 4017520 - 4018269 | 27878.4 |
| hypothetical protein | RT97_18650 | Not Available | Positive | 4018302 - 4018928 | 23125.2 |
| glutamine--scyllo-inositol aminotransferase | RT97_18655 | Not Available | Negative | 4018930 - 4020042 | 40143.8 |
| sam-dependent methyltransferase | RT97_18660 | Not Available | Negative | 4020039 - 4021265 | 45297.1 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | RT97_18665 | Not Available | Negative | 4021262 - 4021822 | 20231.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
