Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_17205 | Not Available | Negative | 3678726 - 3679694 | 34832.8 |
| glycosyl transferase family 1 | RT97_17210 | Not Available | Negative | 3679691 - 3680785 | 40288.4 |
| gdp-l-fucose synthase | RT97_17220 | Not Available | Negative | 3682202 - 3683182 | 36292.5 |
| udp-phosphate galactose phosphotransferase | RT97_17225 | Not Available | Negative | 3683241 - 3683948 | 26603.5 |
| tyrosine protein kinase | RT97_17230 | Not Available | Negative | 3683945 - 3686239 | 82510.6 |
| fad-dependent oxidoreductase | RT97_17235 | Not Available | Negative | 3686284 - 3687506 | 44586.9 |
| carbohydrate kinase | RT97_17240 | Not Available | Negative | 3687503 - 3689050 | 52508.0 |
| transporter | RT97_17245 | Not Available | Positive | 3689231 - 3690277 | 37321.9 |
| d-ribose transporter atp-binding protein | RT97_17250 | Not Available | Positive | 3690294 - 3691820 | 53978.4 |
| abc transporter permease | RT97_17255 | Not Available | Positive | 3691817 - 3692833 | 35479.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
