Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ornithine cyclodeaminase | RT97_16720 | Not Available | Negative | 3582532 - 3583476 | 32742.0 |
| alpha/beta hydrolase | RT97_16725 | Not Available | Negative | 3583473 - 3584327 | 31057.8 |
| phosphotyrosine protein phosphatase | RT97_16730 | Not Available | Negative | 3584379 - 3584720 | 13104.7 |
| transcriptional regulator | RT97_16735 | Not Available | Negative | 3584737 - 3586350 | 59559.0 |
| rna-binding protein | RT97_16740 | Not Available | Positive | 3586565 - 3588124 | 55734.4 |
| hypothetical protein | RT97_16745 | Not Available | Positive | 3589063 - 3589563 | 18818.4 |
| rna ligase | RT97_16750 | Not Available | Positive | 3589601 - 3590821 | 44286.2 |
| hypothetical protein | RT97_16755 | Not Available | Positive | 3590871 - 3591515 | 23696.3 |
| nucleotidyltransferase | RT97_16760 | Not Available | Positive | 3591536 - 3592381 | 31664.9 |
| rna 3'-terminal-phosphate cyclase | RT97_16765 | Not Available | Positive | 3592378 - 3593415 | 36364.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
