Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion protein vgr | RT97_16560 | Not Available | Negative | 3546096 - 3548474 | 87193.7 |
| type vi secretion protein | RT97_16565 | Not Available | Negative | 3548530 - 3548925 | 13443.7 |
| hypothetical protein | RT97_16575 | Not Available | Negative | 3549655 - 3550707 | 37568.6 |
| hypothetical protein | RT97_16580 | Not Available | Negative | 3550704 - 3553298 | 94050.7 |
| trehalose utilization | RT97_16585 | Not Available | Positive | 3553725 - 3554786 | 37834.3 |
| dehydrogenase | RT97_16590 | Not Available | Positive | 3554844 - 3557066 | 77928.0 |
| pyrroloquinoline quinone biosynthesis protein pqqb | RT97_16595 | Not Available | Positive | 3557233 - 3558153 | 32719.2 |
| pyrroloquinoline quinone biosynthesis protein pqqc | RT97_16600 | Not Available | Positive | 3558158 - 3558910 | 29100.4 |
| pyrroloquinoline quinone biosynthesis protein pqqd | RT97_16605 | Not Available | Positive | 3558907 - 3559182 | 10227.2 |
| pyrroloquinoline quinone biosynthesis protein pqqe | RT97_16610 | Not Available | Positive | 3559160 - 3560332 | 42960.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
