Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hcp1 family type vi secretion system effector | RT97_16505 | Not Available | Positive | 3535393 - 3535875 | 17007.0 |
| hypothetical protein | RT97_16510 | Not Available | Positive | 3535940 - 3536500 | 20026.4 |
| hypothetical protein | RT97_16515 | Not Available | Positive | 3536571 - 3537104 | 19287.9 |
| serine/threonine protein phosphatase | RT97_16520 | Not Available | Negative | 3537142 - 3537981 | 29964.3 |
| signal peptide protein | RT97_16525 | Not Available | Negative | 3538061 - 3539770 | 58583.6 |
| hypothetical protein | RT97_16530 | Not Available | Negative | 3540070 - 3541359 | 45970.9 |
| hypothetical protein | RT97_16535 | Not Available | Negative | 3541373 - 3542059 | 24776.0 |
| 3-oxoacyl-acp synthase | RT97_16545 | Not Available | Negative | 3543409 - 3544446 | 36666.8 |
| hypothetical protein | RT97_16550 | Not Available | Negative | 3544443 - 3545555 | 40065.4 |
| hypothetical protein | RT97_16555 | Not Available | Negative | 3545581 - 3546072 | 17059.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
