Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl transferase family 1 | RT97_16455 | Not Available | Positive | 3525130 - 3526317 | 42373.6 |
| hypothetical protein | RT97_16460 | Not Available | Positive | 3526308 - 3526592 | 10614.5 |
| fad-dependent oxidoreductase | RT97_16465 | Not Available | Positive | 3526626 - 3527939 | 48102.7 |
| luxr family transcriptional regulator | RT97_16470 | Not Available | Negative | 3528107 - 3528796 | 24253.8 |
| type iv / vi secretion system, dotu | RT97_16475 | Not Available | Positive | 3529041 - 3530366 | 48317.3 |
| hypothetical protein | RT97_16480 | Not Available | Positive | 3530363 - 3531502 | 40878.5 |
| type vi secretion protein | RT97_16485 | Not Available | Negative | 3531520 - 3532032 | 18177.0 |
| type vi secretion protein impa | RT97_16490 | Not Available | Positive | 3532104 - 3533135 | 36313.3 |
| hypothetical protein | RT97_16495 | Not Available | Positive | 3533196 - 3533711 | 18598.4 |
| evpb family type vi secretion protein | RT97_16500 | Not Available | Positive | 3533762 - 3535255 | 55277.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
