Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-thr | Not Available | Not Available | Positive | 3507737 - 3507811 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 3507852 - 3507925 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 3507991 - 3508076 | Not Available |
| uracil-dna glycosylase | RT97_16365 | Not Available | Negative | 3508185 - 3508892 | 25504.6 |
| indole-3-glycerol-phosphate synthase | RT97_16370 | Not Available | Negative | 3508889 - 3509689 | 28620.5 |
| anthranilate phosphoribosyltransferase | RT97_16375 | Not Available | Negative | 3509720 - 3510742 | 35870.6 |
| lysine transporter lyse | RT97_16380 | Not Available | Negative | 3510771 - 3511433 | 23100.7 |
| threonine aldolase | RT97_16385 | Not Available | Negative | 3511450 - 3512508 | 37408.8 |
| anthranilate synthase component ii | RT97_16390 | Not Available | Negative | 3512513 - 3513097 | 21033.3 |
| hypothetical protein | RT97_16395 | Not Available | Negative | 3513094 - 3513486 | 13984.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
