Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| triosephosphate isomerase | RT97_16250 | Not Available | Negative | 3481458 - 3482243 | 26664.9 |
| nad(p)h-quinone oxidoreductase | RT97_16255 | Not Available | Negative | 3482237 - 3483235 | 34589.0 |
| polynucleotide phosphorylase/polyadenylase | RT97_16260 | Not Available | Negative | 3483323 - 3485662 | 84880.4 |
| 30s ribosomal protein s15 | RT97_16265 | Not Available | Negative | 3485869 - 3486135 | 9889.12 |
| transporter | RT97_16270 | Not Available | Negative | 3486225 - 3487154 | 31900.2 |
| aspartate aminotransferase | RT97_16275 | Not Available | Negative | 3487233 - 3488405 | 42344.1 |
| abc transporter permease | RT97_16280 | Not Available | Negative | 3488433 - 3489722 | 46633.0 |
| heat-shock protein hsp20 | RT97_16285 | Not Available | Positive | 3489847 - 3490218 | 13678.3 |
| esterase | RT97_16290 | Not Available | Positive | 3490409 - 3491164 | 27903.2 |
| protein kinase | RT97_16295 | Not Available | Negative | 3491100 - 3492161 | 36884.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
