Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rard protein | RT97_16050 | Not Available | Negative | 3443912 - 3444286 | 13407.0 |
| aminotransferase | RT97_16055 | Not Available | Negative | 3444315 - 3445490 | 42703.5 |
| transcriptional regulator | RT97_16060 | Not Available | Negative | 3445631 - 3446572 | 34962.2 |
| cobalamin biosynthesis protein cbix | RT97_16065 | Not Available | Negative | 3446635 - 3447012 | 13419.2 |
| permease | RT97_16070 | Not Available | Negative | 3447009 - 3448118 | 41440.8 |
| permease | RT97_16075 | Not Available | Negative | 3448115 - 3449254 | 42019.6 |
| cytosol aminopeptidase | RT97_16080 | Not Available | Positive | 3449276 - 3450790 | 51787.3 |
| dna polymerase iii subunit chi | RT97_16085 | Not Available | Positive | 3450787 - 3451230 | 16350.3 |
| hypothetical protein | RT97_16090 | Not Available | Positive | 3451232 - 3451627 | 13844.5 |
| branched-chain amino acid abc transporter substrate-binding protein | RT97_16095 | Not Available | Positive | 3451765 - 3452973 | 41765.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
