Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| twitching motility protein pilt | RT97_15995 | Not Available | Negative | 3428292 - 3429440 | 41966.8 |
| 2,3,4,5-tetrahydropyridine-2,6-carboxylate n-succinyltransferase | RT97_16000 | Not Available | Negative | 3429607 - 3430440 | 29552.2 |
| succinyldiaminopimelate aminotransferase | RT97_16005 | Not Available | Negative | 3430493 - 3431704 | 43654.1 |
| lysr family transcriptional regulator | RT97_16010 | Not Available | Negative | 3431737 - 3432603 | 31757.4 |
| quinone oxidoreductase | RT97_16015 | Not Available | Positive | 3432717 - 3433703 | 33918.8 |
| hypothetical protein | RT97_16020 | Not Available | Negative | 3433721 - 3434716 | 35402.9 |
| amino acid transporter | RT97_16025 | Not Available | Negative | 3434851 - 3435489 | 22276.9 |
| amino acid acetyltransferase | RT97_16030 | Not Available | Negative | 3435515 - 3436861 | 49427.6 |
| peptidase m41 | RT97_16035 | Not Available | Negative | 3436902 - 3438899 | 73107.3 |
| atp-dependent helicase | RT97_16040 | Not Available | Positive | 3439280 - 3443143 | 144152.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
