Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_01485 | Not Available | Negative | 328746 - 329222 | 16868.3 |
| hypothetical protein | RT97_01490 | Not Available | Negative | 329219 - 329722 | 17007.0 |
| 4-deoxy-4-formamido-l-arabinose-phospho-udp deformylase | RT97_01495 | Not Available | Negative | 330034 - 332334 | 79669.9 |
| cd(ii)/pb(ii)-responsive transcriptional regulator | RT97_01500 | Not Available | Positive | 332404 - 332877 | 17486.8 |
| hypothetical protein | RT97_01510 | Not Available | Positive | 333369 - 333758 | 14221.9 |
| serine acetyltransferase | RT97_01515 | Not Available | Negative | 333781 - 334554 | 27260.6 |
| rrna methyltransferase | RT97_01520 | Not Available | Negative | 334632 - 335387 | 27374.9 |
| inositol monophosphatase | RT97_01525 | Not Available | Positive | 335520 - 336572 | 37718.6 |
| hypothetical protein | RT97_01530 | Not Available | Positive | 336572 - 338809 | 80754.5 |
| mechanosensitive ion channel protein mscs | RT97_01535 | Not Available | Positive | 338809 - 339879 | 38764.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
