Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thymidylate kinase | RT97_15260 | Not Available | Negative | 3281637 - 3282296 | 23699.2 |
| aminodeoxychorismate lyase | RT97_15265 | Not Available | Negative | 3282293 - 3283315 | 36789.3 |
| folate-binding protein | RT97_15270 | Not Available | Positive | 3283414 - 3284340 | 31850.4 |
| hypothetical protein | RT97_15275 | Not Available | Positive | 3284495 - 3285409 | 32443.1 |
| 4-hydroxybenzoyl-coa thioesterase | RT97_15280 | Not Available | Negative | 3285420 - 3286295 | 32842.1 |
| alpha/beta hydrolase | RT97_15285 | Not Available | Negative | 3286292 - 3287257 | 34314.0 |
| 4-hydroxybutyrate dehydrogenase | RT97_15290 | Not Available | Positive | 3287417 - 3288553 | 39953.4 |
| type vi secretion protein vgr | RT97_15295 | Not Available | Positive | 3288720 - 3291062 | 86549.9 |
| hypothetical protein | RT97_15300 | Not Available | Positive | 3291071 - 3291508 | 15939.2 |
| hypothetical protein | RT97_15305 | Not Available | Positive | 3291539 - 3294172 | 96701.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
