Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine kinase | RT97_14160 | Not Available | Negative | 3066290 - 3068620 | 83390.8 |
| signal peptide protein | RT97_14165 | Not Available | Negative | 3068617 - 3069258 | 23964.1 |
| 16s rrna methyltransferase | RT97_14170 | Not Available | Negative | 3069245 - 3070570 | 47672.2 |
| lema family protein | RT97_14175 | Not Available | Negative | 3070693 - 3071304 | 21475.9 |
| dna-directed rna polymerase subunit beta' | RT97_14180 | Not Available | Negative | 3071403 - 3075632 | 154822.0 |
| dna-directed rna polymerase subunit beta | RT97_14185 | Not Available | Negative | 3075654 - 3079778 | 152739.0 |
| 50s ribosomal protein l7/l12 | RT97_14190 | Not Available | Negative | 3080035 - 3080412 | 12728.3 |
| 50s ribosomal protein l10 | RT97_14195 | Not Available | Negative | 3080457 - 3080993 | 18399.3 |
| 50s ribosomal protein l1 | RT97_14200 | Not Available | Negative | 3081249 - 3081947 | 23991.3 |
| 50s ribosomal protein l11 | RT97_14205 | Not Available | Negative | 3081948 - 3082379 | 15101.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
