Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nudix hydrolase | RT97_01265 | Not Available | Positive | 273239 - 273715 | 17273.3 |
| membrane protein | RT97_01270 | Not Available | Negative | 273725 - 274531 | 27398.4 |
| lysr family transcriptional regulator | RT97_01275 | Not Available | Positive | 274588 - 275493 | 33243.4 |
| epimerase | RT97_01280 | Not Available | Negative | 275480 - 276457 | 34761.4 |
| symporter | RT97_01285 | Not Available | Negative | 276454 - 277353 | 31654.0 |
| monooxygenase | RT97_01290 | Not Available | Negative | 277374 - 278702 | 49298.3 |
| short-chain dehydrogenase | RT97_01295 | Not Available | Negative | 278702 - 279523 | 28372.7 |
| hypothetical protein | RT97_01300 | Not Available | Negative | 279617 - 280003 | 12642.5 |
| hypothetical protein | RT97_01305 | Not Available | Positive | 280233 - 280802 | 20956.7 |
| hypothetical protein | RT97_01310 | Not Available | Positive | 280808 - 281815 | 36281.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
