Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_13545 | Not Available | Negative | 2930884 - 2931735 | 30342.2 |
| 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase | RT97_13550 | Not Available | Negative | 2931783 - 2934128 | 86826.5 |
| lysr family transcriptional regulator | RT97_13555 | Not Available | Positive | 2934230 - 2935156 | 34471.8 |
| lysr family transcriptional regulator | RT97_13560 | Not Available | Negative | 2935125 - 2936072 | 34243.1 |
| amidase | RT97_13565 | Not Available | Positive | 2936235 - 2937626 | 48176.9 |
| mfs transporter permease | RT97_13570 | Not Available | Positive | 2937635 - 2938951 | 44773.1 |
| 3-hydroxyisobutyrate dehydrogenase | RT97_13575 | Not Available | Negative | 2939112 - 2940008 | 29952.6 |
| enoyl-coa hydratase | RT97_13580 | Not Available | Negative | 2940043 - 2941158 | 40439.5 |
| acyl-coa dehydrogenase | RT97_13585 | Not Available | Negative | 2941187 - 2942341 | 40963.6 |
| methylmalonate-semialdehyde dehydrogenase | RT97_13595 | Not Available | Negative | 2942733 - 2944256 | 53979.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
