Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-ala-xaa dipeptidase | RT97_13495 | Not Available | Negative | 2919374 - 2921110 | 62121.6 |
| beta-ala-xaa dipeptidase | RT97_13500 | Not Available | Negative | 2921249 - 2922988 | 61813.4 |
| dna-3-methyladenine glycosylase | RT97_13505 | Not Available | Positive | 2923049 - 2923639 | 21803.2 |
| alpha/beta hydrolase | RT97_13510 | Not Available | Negative | 2923727 - 2924077 | 11510.4 |
| carboxyvinyl-carboxyphosphonate phosphorylmutase | RT97_13515 | Not Available | Negative | 2924242 - 2925123 | 31665.2 |
| twin-arginine translocation pathway signal | RT97_13520 | Not Available | Negative | 2925131 - 2926099 | 33288.3 |
| 2-methylcitrate dehydratase | RT97_13525 | Not Available | Negative | 2926198 - 2927667 | 53802.5 |
| methylcitrate synthase | RT97_13530 | Not Available | Negative | 2927713 - 2928879 | 42747.0 |
| thioesterase | RT97_13535 | Not Available | Negative | 2928876 - 2929289 | 14853.9 |
| cro/cl family transcriptional regulator | RT97_13540 | Not Available | Positive | 2929431 - 2930942 | 55385.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
