Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| secretin | RT97_01215 | Not Available | Positive | 262690 - 264795 | 74548.9 |
| spermidine/putrescine abc transporter atpase | RT97_01220 | Not Available | Positive | 264879 - 265904 | 36402.0 |
| abc transporter substrate-binding protein | RT97_01225 | Not Available | Positive | 265956 - 267224 | 46005.4 |
| abc transporter permease | RT97_01230 | Not Available | Positive | 267241 - 268158 | 33700.1 |
| abc transporter permease | RT97_01235 | Not Available | Positive | 268249 - 269139 | 31572.5 |
| fatty acid hydroxylase | RT97_01240 | Not Available | Positive | 269205 - 270329 | 42572.2 |
| distant relative of cell wall-associated hydrolase | RT97_01245 | Not Available | Positive | 270329 - 271117 | 27397.3 |
| membrane protein | RT97_01250 | Not Available | Positive | 271122 - 272354 | 43724.2 |
| 30s ribosomal protein s21 | RT97_01255 | Not Available | Positive | 272466 - 272678 | 8506.61 |
| glutamyl-trna amidotransferase | RT97_01260 | Not Available | Positive | 272790 - 273239 | 15830.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
