Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | RT97_12670 | Not Available | Positive | 2725419 - 2726168 | 25977.2 |
| hypothetical protein | RT97_12675 | Not Available | Negative | 2726173 - 2726580 | 15043.1 |
| peptidase m1 | RT97_12680 | Not Available | Negative | 2726662 - 2728887 | 81534.3 |
| mfs transporter | RT97_12685 | Not Available | Negative | 2729570 - 2730886 | 46208.7 |
| porin | RT97_12690 | Not Available | Negative | 2730937 - 2732043 | 38231.3 |
| ferredoxin | RT97_12695 | Not Available | Negative | 2732079 - 2733047 | 34759.7 |
| 3-phenylpropionate dioxygenase | RT97_12700 | Not Available | Negative | 2733173 - 2734195 | 38922.6 |
| hypothetical protein | RT97_12705 | Not Available | Negative | 2734206 - 2734436 | 8513.04 |
| salicylate hydroxylase | RT97_12710 | Not Available | Negative | 2734468 - 2735625 | 41026.8 |
| laci family transcriptional regulator | RT97_12715 | Not Available | Negative | 2735655 - 2736641 | 34296.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
