Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | RT97_01165 | Not Available | Negative | 247150 - 248121 | 34035.2 |
| atp-dependent dna helicase recq | RT97_01170 | Not Available | Positive | 248482 - 250317 | 67202.4 |
| nucleoside hydrolase | RT97_01175 | Not Available | Negative | 250385 - 251569 | 42023.4 |
| peptidase s41 | RT97_01180 | Not Available | Negative | 251748 - 253382 | 56538.5 |
| atpase | RT97_01185 | Not Available | Negative | 253432 - 255756 | 85794.4 |
| threonine dehydratase | RT97_01190 | Not Available | Positive | 255864 - 257072 | 42596.8 |
| phosphoenolpyruvate carboxykinase | RT97_01195 | Not Available | Positive | 257472 - 259337 | 68294.4 |
| glycosyl transferase | RT97_01200 | Not Available | Positive | 259673 - 260578 | 31651.6 |
| uroporphyrin-iii methyltransferase | RT97_01205 | Not Available | Positive | 260575 - 261375 | 27614.4 |
| hypothetical protein | RT97_01210 | Not Available | Negative | 261382 - 262467 | 37850.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
