Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid abc transporter substrate-binding protein | RT97_12470 | Not Available | Negative | 2681555 - 2682460 | 32506.0 |
| c4-dicarboxylate abc transporter | RT97_12475 | Not Available | Negative | 2682469 - 2683776 | 46477.5 |
| aldose epimerase | RT97_12480 | Not Available | Positive | 2683905 - 2684741 | 30390.1 |
| imidazole glycerol phosphate synthase | RT97_12485 | Not Available | Positive | 2684764 - 2685549 | 27297.5 |
| phosphoribosyl-amp cyclohydrolase | RT97_12490 | Not Available | Positive | 2685594 - 2685983 | 14852.7 |
| phosphoribosyl-atp pyrophosphatase | RT97_12495 | Not Available | Positive | 2685980 - 2686372 | 13970.4 |
| membrane protein | RT97_12500 | Not Available | Positive | 2686383 - 2686772 | 14797.3 |
| hit family hydrolase | RT97_12505 | Not Available | Positive | 2686762 - 2687121 | 13146.0 |
| preprotein translocase subunit tata | RT97_12510 | Not Available | Positive | 2687187 - 2687438 | 8707.46 |
| preprotein translocase | RT97_12515 | Not Available | Positive | 2687452 - 2687910 | 16871.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
