Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp phosphoribosyltransferase catalytic subunit | RT97_12420 | Not Available | Positive | 2673193 - 2673849 | 23643.9 |
| histidinol dehydrogenase | RT97_12425 | Not Available | Positive | 2673846 - 2675168 | 46678.7 |
| membrane protein | RT97_12430 | Not Available | Positive | 2675207 - 2676031 | 29870.2 |
| hypothetical protein | RT97_12435 | Not Available | Positive | 2676037 - 2676396 | 13221.0 |
| hypothetical protein | RT97_12440 | Not Available | Positive | 2676404 - 2677078 | 25009.5 |
| histidinol-phosphate aminotransferase | RT97_12445 | Not Available | Positive | 2677071 - 2678153 | 38907.5 |
| imidazoleglycerol-phosphate dehydratase | RT97_12450 | Not Available | Positive | 2678150 - 2678758 | 21874.1 |
| imidazole glycerol phosphate synthase | RT97_12455 | Not Available | Positive | 2678778 - 2679434 | 23746.2 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | RT97_12460 | Not Available | Positive | 2679592 - 2680335 | 26082.3 |
| atp-binding protein | RT97_12465 | Not Available | Positive | 2680355 - 2681527 | 42370.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
