Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| secretin | RT97_12315 | Not Available | Positive | 2649882 - 2652032 | 76181.1 |
| shikimate kinase | RT97_12320 | Not Available | Positive | 2652056 - 2652604 | 19938.0 |
| 3-dehydroquinate synthase | RT97_12325 | Not Available | Positive | 2652639 - 2653760 | 39409.9 |
| deoxyguanosinetriphosphate triphosphohydrolase | RT97_12330 | Not Available | Positive | 2653822 - 2654952 | 42766.5 |
| mfs transporter | RT97_12335 | Not Available | Positive | 2654949 - 2656205 | 42278.5 |
| peptidase | RT97_12340 | Not Available | Positive | 2656202 - 2656777 | 20612.1 |
| sam-dependent methyltransferase | RT97_12345 | Not Available | Positive | 2656774 - 2657655 | 32400.1 |
| hypothetical protein | RT97_12350 | Not Available | Negative | 2657674 - 2658393 | 25744.1 |
| transposase | RT97_12355 | Not Available | Positive | 2658469 - 2659164 | 25990.9 |
| glutamate synthase | RT97_12360 | Not Available | Positive | 2659349 - 2664088 | 172358.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
