Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c assembly protein | RT97_12265 | Not Available | Positive | 2639283 - 2640599 | 49136.2 |
| sulfoxide reductase catalytic subunit yedy | RT97_12270 | Not Available | Positive | 2640721 - 2641734 | 37484.0 |
| sulfite oxidase | RT97_12275 | Not Available | Positive | 2641763 - 2642419 | 24614.9 |
| diaminopimelate decarboxylase | RT97_12280 | Not Available | Negative | 2642425 - 2643696 | 45506.7 |
| frataxin | RT97_12285 | Not Available | Positive | 2643975 - 2644307 | 12117.0 |
| penicillin-binding protein | RT97_12290 | Not Available | Negative | 2644319 - 2646730 | 87609.9 |
| pilus assembly protein pilm | RT97_12295 | Not Available | Positive | 2646969 - 2648048 | 38904.6 |
| fimbrial protein | RT97_12300 | Not Available | Positive | 2648045 - 2648665 | 22834.5 |
| pilus assembly protein pilo | RT97_12305 | Not Available | Positive | 2648672 - 2649349 | 25072.1 |
| pilus assembly protein pilp | RT97_12310 | Not Available | Positive | 2649346 - 2649885 | 20142.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
