Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipocalin | RT97_12115 | Not Available | Negative | 2603688 - 2604362 | 24469.3 |
| transaldolase | RT97_12120 | Not Available | Positive | 2604610 - 2605566 | 34671.5 |
| glucose-6-phosphate isomerase | RT97_12125 | Not Available | Positive | 2605569 - 2607119 | 56315.0 |
| 4-hydroxythreonine-4-phosphate dehydrogenase | RT97_12130 | Not Available | Negative | 2607126 - 2608190 | 37375.0 |
| abc transporter substrate-binding protein | RT97_12135 | Not Available | Negative | 2608231 - 2609205 | 33496.4 |
| lysr family transcriptional regulator | RT97_12140 | Not Available | Positive | 2609328 - 2610233 | 32667.8 |
| sugar abc transporter substrate-binding protein | RT97_12145 | Not Available | Positive | 2610423 - 2611733 | 47502.1 |
| sugar abc transporter permease | RT97_12150 | Not Available | Positive | 2611883 - 2612740 | 32080.4 |
| mannitol abc transporter permease | RT97_12155 | Not Available | Positive | 2612890 - 2613714 | 30084.4 |
| abc transporter atp-binding protein | RT97_12160 | Not Available | Positive | 2613882 - 2614922 | 37561.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
