Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate abc transporter permease | RT97_12010 | Not Available | Negative | 2579662 - 2580393 | 26935.3 |
| abc transporter substrate-binding protein | RT97_12015 | Not Available | Negative | 2580485 - 2581384 | 32275.6 |
| aspartate ammonia-lyase | RT97_12020 | Not Available | Negative | 2581564 - 2583018 | 51723.5 |
| lysr family transcriptional regulator | RT97_12025 | Not Available | Negative | 2583192 - 2584184 | 36265.5 |
| amidase | RT97_12030 | Not Available | Positive | 2584246 - 2585688 | 51865.0 |
| 2-hydroxyacid dehydrogenase | RT97_12035 | Not Available | Negative | 2585813 - 2586751 | 33035.8 |
| hypothetical protein | RT97_12045 | Not Available | Positive | 2586764 - 2586943 | 6103.25 |
| abc transporter permease | RT97_12050 | Not Available | Positive | 2587139 - 2588119 | 36099.7 |
| amidohydrolase | RT97_12055 | Not Available | Positive | 2588121 - 2589383 | 44490.3 |
| abc transporter substrate-binding protein | RT97_12060 | Not Available | Positive | 2589414 - 2590994 | 58075.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
