Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_11960 | Not Available | Positive | 2568494 - 2569870 | 52168.1 |
| hypothetical protein | RT97_11965 | Not Available | Positive | 2570097 - 2571098 | 37830.0 |
| hypothetical protein | RT97_11970 | Not Available | Positive | 2571086 - 2571604 | 19422.2 |
| hypothetical protein | RT97_11975 | Not Available | Positive | 2571601 - 2573466 | 68169.1 |
| c4-dicarboxylate abc transporter | RT97_11980 | Not Available | Positive | 2573847 - 2574434 | 21539.2 |
| c4-dicarboxylate abc transporter | RT97_11985 | Not Available | Positive | 2574431 - 2575729 | 45612.2 |
| c4-dicarboxylate abc transporter | RT97_11990 | Not Available | Positive | 2575787 - 2576824 | 37410.5 |
| nucleoside hydrolase | RT97_11995 | Not Available | Positive | 2577190 - 2578128 | 33589.7 |
| amino acid abc transporter atp-binding protein | RT97_12000 | Not Available | Negative | 2578198 - 2578935 | 27115.4 |
| amino acid abc transporter permease | RT97_12005 | Not Available | Negative | 2578971 - 2579660 | 25601.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
