Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_11705 | Not Available | Negative | 2514057 - 2514782 | 26424.1 |
| saccharopine dehydrogenase | RT97_11710 | Not Available | Negative | 2514805 - 2515836 | 36202.9 |
| tetr family transcriptional regulator | RT97_11715 | Not Available | Positive | 2515945 - 2516562 | 22669.2 |
| hypothetical protein | RT97_11720 | Not Available | Negative | 2516573 - 2516830 | 8635.26 |
| cytosine deaminase | RT97_11730 | Not Available | Negative | 2518270 - 2519472 | 42399.3 |
| membrane protein | RT97_11735 | Not Available | Positive | 2519603 - 2520538 | 32198.5 |
| hypothetical protein | RT97_11740 | Not Available | Positive | 2520678 - 2521508 | 29567.8 |
| abc transporter substrate-binding protein | RT97_11745 | Not Available | Negative | 2521681 - 2522649 | 34093.9 |
| beta-lactamase | RT97_11750 | Not Available | Positive | 2522830 - 2524524 | 60504.1 |
| rna-binding protein s4 | RT97_11755 | Not Available | Positive | 2524521 - 2525243 | 26216.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
