Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamyl-trna reductase | RT97_11535 | Not Available | Negative | 2476369 - 2477640 | 45814.3 |
| hypothetical protein | RT97_11540 | Not Available | Positive | 2477766 - 2478044 | 9899.44 |
| gcn5 family acetyltransferase | RT97_11545 | Not Available | Negative | 2478052 - 2478564 | 18102.5 |
| abc transporter atp-binding protein | RT97_11550 | Not Available | Negative | 2478564 - 2479358 | 29035.5 |
| abc transporter permease | RT97_11555 | Not Available | Negative | 2479358 - 2480254 | 31005.3 |
| abc transporter substrate-binding protein | RT97_11560 | Not Available | Negative | 2480270 - 2481238 | 32856.6 |
| asnc family transcriptional regulator | RT97_11565 | Not Available | Positive | 2481457 - 2481933 | 17860.9 |
| mechanosensitive ion channel protein mscs | RT97_11570 | Not Available | Negative | 2481937 - 2484456 | 88217.0 |
| glycerophosphodiester phosphodiesterase | RT97_11575 | Not Available | Negative | 2484508 - 2485254 | 26725.7 |
| glycerol-3-phosphate transporter atp-binding subunit | RT97_11580 | Not Available | Negative | 2485258 - 2486257 | 36584.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
