Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-glutamyl kinase | RT97_11485 | Not Available | Positive | 2466962 - 2468101 | 40349.6 |
| hypothetical protein | RT97_11490 | Not Available | Negative | 2468167 - 2468679 | 18718.0 |
| rna pyrophosphohydrolase | RT97_11495 | Not Available | Negative | 2468708 - 2469376 | 26291.0 |
| proline--trna ligase | RT97_11500 | Not Available | Positive | 2469522 - 2471267 | 63877.8 |
| lytic transglycosylase | RT97_11505 | Not Available | Positive | 2471321 - 2472001 | 25553.5 |
| membrane protein | RT97_11510 | Not Available | Negative | 2472109 - 2473392 | 47739.2 |
| mannose-6-phosphate isomerase | RT97_11515 | Not Available | Negative | 2473445 - 2473957 | 18366.4 |
| glutaredoxin | RT97_11520 | Not Available | Negative | 2473974 - 2474300 | 11932.4 |
| sam-dependent methyltransferase | RT97_11525 | Not Available | Negative | 2474333 - 2475181 | 29797.3 |
| peptide chain release factor 1 | RT97_11530 | Not Available | Negative | 2475181 - 2476269 | 40518.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
