Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alginate o-acetyltransferase | RT97_11435 | Not Available | Negative | 2457591 - 2459084 | 55932.6 |
| dephospho-coa kinase | RT97_11440 | Not Available | Negative | 2459158 - 2459766 | 21214.7 |
| peptidase a24 | RT97_11445 | Not Available | Negative | 2459777 - 2460742 | 34406.8 |
| type ii secretion system protein f | RT97_11450 | Not Available | Negative | 2460742 - 2461974 | 44932.3 |
| general secretion pathway protein gspe | RT97_11455 | Not Available | Negative | 2461999 - 2463732 | 62541.4 |
| Trna-pro | Not Available | Not Available | Positive | 2463845 - 2463921 | Not Available |
| octaprenyl diphosphate synthase | RT97_11465 | Not Available | Negative | 2463975 - 2464967 | 35096.0 |
| 50s ribosomal protein l21 | RT97_11470 | Not Available | Positive | 2465151 - 2465462 | 11196.7 |
| 50s ribosomal protein l27 | RT97_11475 | Not Available | Positive | 2465475 - 2465735 | 8933.88 |
| gtpase cgta | RT97_11480 | Not Available | Positive | 2465807 - 2466883 | 38773.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
