Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_11125 | Not Available | Positive | 2397363 - 2398100 | 26479.7 |
| 2-dehydropantoate 2-reductase | RT97_11130 | Not Available | Negative | 2398131 - 2399108 | 34247.8 |
| aldolase | RT97_11135 | Not Available | Negative | 2399131 - 2399919 | 28528.1 |
| twin-arginine translocation pathway signal protein | RT97_11140 | Not Available | Negative | 2399938 - 2400927 | 34324.4 |
| polyketide cyclase | RT97_11145 | Not Available | Negative | 2401060 - 2401527 | 17204.5 |
| alpha-dehydro-beta-deoxy-d-glucarate aldolase | RT97_11150 | Not Available | Negative | 2401553 - 2402383 | 29076.9 |
| 2-oxo-hepta-3-ene-1,7-dioate hydratase | RT97_11155 | Not Available | Negative | 2402408 - 2403211 | 29322.1 |
| 5-carboxymethyl-2-hydroxymuconate isomerase | RT97_11160 | Not Available | Negative | 2403227 - 2403634 | 14923.9 |
| extradiol ring-cleavage dioxygenase | RT97_11165 | Not Available | Negative | 2403653 - 2404480 | 30147.0 |
| aromatic ring-opening dioxygenase liga | RT97_11170 | Not Available | Negative | 2404566 - 2404901 | 12222.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
