Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gluconolactonase | RT97_11075 | Not Available | Positive | 2386646 - 2387587 | 34164.1 |
| lysr family transcriptional regulator | RT97_11080 | Not Available | Positive | 2387876 - 2388757 | 32290.7 |
| glycolate oxidase subunit glcd | RT97_11085 | Not Available | Positive | 2388883 - 2390385 | 53326.3 |
| glycolate oxidase | RT97_11090 | Not Available | Positive | 2390414 - 2391505 | 38388.7 |
| glycolate oxidase iron-sulfur subunit | RT97_11095 | Not Available | Positive | 2391525 - 2392760 | 44571.0 |
| hypothetical protein | RT97_11100 | Not Available | Positive | 2392856 - 2393281 | 14380.3 |
| glutathione peroxidase | RT97_11105 | Not Available | Negative | 2393292 - 2393780 | 17506.9 |
| membrane protein | RT97_11110 | Not Available | Negative | 2393793 - 2394683 | 31079.5 |
| major facilitator transporter | RT97_11115 | Not Available | Negative | 2394754 - 2396058 | 46619.0 |
| alanine racemase | RT97_11120 | Not Available | Positive | 2396251 - 2397366 | 40308.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
