Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylacetate-coa oxygenase | RT97_10895 | Not Available | Positive | 2344641 - 2345165 | 18694.5 |
| phenylacetic acid degradation protein | RT97_10900 | Not Available | Positive | 2345296 - 2346381 | 39566.3 |
| branched-chain amino acid abc transporter substrate-binding protein | RT97_10905 | Not Available | Positive | 2346425 - 2347570 | 40008.4 |
| abc transporter permease | RT97_10910 | Not Available | Positive | 2347712 - 2348740 | 36200.8 |
| metal-dependent hydrolase | RT97_10920 | Not Available | Positive | 2350644 - 2351393 | 27301.6 |
| enoyl-coa hydratase | RT97_10925 | Not Available | Positive | 2351422 - 2353473 | 72416.5 |
| 2-deoxy-d-gluconate 3-dehydrogenase | RT97_10930 | Not Available | Positive | 2353473 - 2354231 | 25686.7 |
| isoprenylcysteine carboxyl methyltransferase | RT97_10935 | Not Available | Positive | 2354262 - 2354822 | 21149.2 |
| branched-chain amino acid abc transporter atp-binding protein | RT97_10955 | Not Available | Negative | 2359958 - 2360749 | 28763.3 |
| hypothetical protein | RT97_10960 | Not Available | Negative | 2360772 - 2362007 | 43920.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
