Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine carboxypeptidase | RT97_10585 | Not Available | Positive | 2275232 - 2276077 | 31553.4 |
| membrane protein | RT97_10590 | Not Available | Positive | 2276137 - 2276430 | 10560.4 |
| hypothetical protein | RT97_10595 | Not Available | Positive | 2276518 - 2278005 | 52186.6 |
| type vi secretion protein vask | RT97_10600 | Not Available | Positive | 2278031 - 2281873 | 140707.0 |
| type vi secretion protein | RT97_10605 | Not Available | Positive | 2281870 - 2282859 | 37091.8 |
| cell envelope biogenesis protein ompa | RT97_10610 | Not Available | Positive | 2282867 - 2283700 | 29170.9 |
| type vi secretion protein impa | RT97_10615 | Not Available | Negative | 2283734 - 2284870 | 41686.2 |
| type vi secretion system protein impk | RT97_10620 | Not Available | Negative | 2284867 - 2285649 | 28547.4 |
| type vi secretion protein | RT97_10625 | Not Available | Negative | 2285675 - 2287021 | 49816.6 |
| membrane protein | RT97_10630 | Not Available | Negative | 2287086 - 2287709 | 21917.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
