Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| virulence protein scie type | RT97_00955 | Not Available | Negative | 199198 - 200076 | 31427.1 |
| hypothetical protein | RT97_00960 | Not Available | Negative | 200248 - 200730 | 17105.2 |
| evpb family type vi secretion protein | RT97_00965 | Not Available | Negative | 200776 - 202284 | 56421.4 |
| hypothetical protein | RT97_00970 | Not Available | Negative | 202369 - 202941 | 20652.6 |
| type vi secretion protein impa | RT97_00975 | Not Available | Negative | 203030 - 204127 | 40009.6 |
| fumarylacetoacetate hydrolase | RT97_00980 | Not Available | Negative | 204267 - 205454 | 41504.5 |
| aldehyde dehydrogenase | RT97_00985 | Not Available | Negative | 205579 - 209421 | 135594.0 |
| ferredoxin | RT97_00990 | Not Available | Negative | 209558 - 210058 | 17596.1 |
| abc transporter substrate-binding protein | RT97_00995 | Not Available | Negative | 210036 - 211169 | 40130.3 |
| nicotinamidase | RT97_01000 | Not Available | Negative | 211243 - 211968 | 25525.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
