Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l22 | RT97_10425 | Not Available | Positive | 2246892 - 2247224 | 12072.8 |
| 30s ribosomal protein s3 | RT97_10430 | Not Available | Positive | 2247242 - 2248165 | 33459.3 |
| 50s ribosomal protein l16 | RT97_10435 | Not Available | Positive | 2248194 - 2248610 | 15415.9 |
| 50s ribosomal protein l29 | RT97_10440 | Not Available | Positive | 2248666 - 2248875 | 7709.39 |
| 30s ribosomal protein s17 | RT97_10445 | Not Available | Positive | 2248885 - 2249154 | 10162.5 |
| peroxiredoxin | RT97_10450 | Not Available | Positive | 2249225 - 2249731 | 17561.9 |
| gcn5 family acetyltransferase | RT97_10455 | Not Available | Negative | 2249736 - 2250323 | 20969.8 |
| cytochrome b561 | RT97_10460 | Not Available | Negative | 2250320 - 2251030 | 25381.3 |
| cytochrome c | RT97_10465 | Not Available | Positive | 2251191 - 2251637 | 15542.6 |
| redoxin | RT97_10470 | Not Available | Negative | 2251702 - 2252199 | 17662.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
