Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prolyl-trna synthetase | RT97_10325 | Not Available | Negative | 2230047 - 2230535 | 17356.8 |
| lysine transporter lyse | RT97_10330 | Not Available | Negative | 2230575 - 2231213 | 22603.4 |
| hydroxymethylglutaryl-coa lyase | RT97_10335 | Not Available | Negative | 2231239 - 2232159 | 32522.2 |
| lysr family transcriptional regulator | RT97_10340 | Not Available | Negative | 2232295 - 2233200 | 33225.5 |
| carnitine dehydratase | RT97_10345 | Not Available | Positive | 2233325 - 2234476 | 42109.1 |
| hydroxyquinol 1,2-dioxygenase | RT97_10350 | Not Available | Positive | 2234514 - 2235416 | 32798.8 |
| citrate synthase | RT97_10355 | Not Available | Positive | 2235453 - 2236259 | 27723.5 |
| hypothetical protein | RT97_10360 | Not Available | Positive | 2236256 - 2237197 | 32987.9 |
| hypothetical protein | RT97_10365 | Not Available | Positive | 2237335 - 2238312 | 34784.2 |
| acylphosphatase | RT97_10370 | Not Available | Negative | 2238446 - 2238742 | 10448.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
