Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| addiction module protein | RT97_10275 | Not Available | Positive | 2214219 - 2215289 | 40316.6 |
| hypothetical protein | RT97_10280 | Not Available | Negative | 2215296 - 2216264 | 34276.6 |
| acetylpolyamine aminohydrolase | RT97_10285 | Not Available | Negative | 2216361 - 2217407 | 37571.1 |
| ornithine cyclodeaminase | RT97_10290 | Not Available | Negative | 2217444 - 2218493 | 38083.6 |
| excinuclease abc subunit a | RT97_10295 | Not Available | Negative | 2218611 - 2224361 | 208532.0 |
| amino acid abc transporter substrate-binding protein | RT97_10300 | Not Available | Positive | 2224538 - 2225650 | 38704.8 |
| amino acid abc transporter substrate-binding protein | RT97_10305 | Not Available | Positive | 2225827 - 2226939 | 38831.0 |
| major facilitator transporter | RT97_10310 | Not Available | Negative | 2227267 - 2228961 | 60591.6 |
| dsba oxidoreductase | RT97_10315 | Not Available | Negative | 2229149 - 2229787 | 23334.8 |
| fe-s oxidoreductase | RT97_10320 | Not Available | Negative | 2229784 - 2230050 | 9746.57 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
