Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thymidylate synthase | RT97_10070 | Not Available | Positive | 2176777 - 2177619 | 31975.9 |
| dihydrofolate reductase | RT97_10075 | Not Available | Positive | 2177633 - 2178148 | 18712.2 |
| hypothetical protein | RT97_10080 | Not Available | Positive | 2178145 - 2179269 | 42038.1 |
| hypothetical protein | RT97_10085 | Not Available | Positive | 2179431 - 2179670 | 8876.85 |
| membrane protein | RT97_10090 | Not Available | Negative | 2179693 - 2180203 | 17607.3 |
| hypothetical protein | RT97_10095 | Not Available | Negative | 2180204 - 2180574 | 12915.8 |
| atp-dependent dna helicase ruva | RT97_10100 | Not Available | Negative | 2180583 - 2181155 | 19977.5 |
| phosphate starvation protein phoh | RT97_10105 | Not Available | Positive | 2181325 - 2182266 | 34437.8 |
| rrna maturation factor | RT97_10110 | Not Available | Positive | 2182268 - 2182726 | 16972.2 |
| d-tyrosyl-trna(tyr) deacylase | RT97_10115 | Not Available | Negative | 2182733 - 2183176 | 15604.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
