Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnd transporter | RT97_09670 | Not Available | Positive | 2098237 - 2099739 | 53376.8 |
| glucokinase | RT97_09675 | Not Available | Negative | 2099723 - 2100811 | 40217.7 |
| amino acid abc transporter permease | RT97_09680 | Not Available | Positive | 2100923 - 2102482 | 54941.9 |
| aldehyde dehydrogenase | RT97_09685 | Not Available | Negative | 2102489 - 2103925 | 50531.6 |
| gluconolactonase | RT97_09690 | Not Available | Negative | 2103979 - 2105076 | 40284.5 |
| glucarate dehydratase | RT97_09695 | Not Available | Negative | 2105191 - 2106561 | 49949.6 |
| laci family transcriptional regulator | RT97_09700 | Not Available | Negative | 2106578 - 2107513 | 33139.7 |
| hypothetical protein | RT97_09705 | Not Available | Negative | 2107710 - 2108159 | 15345.6 |
| 5-dehydro-4-deoxyglucarate dehydratase | RT97_09710 | Not Available | Negative | 2108219 - 2109130 | 32329.0 |
| abc transporter substrate-binding protein | RT97_09715 | Not Available | Negative | 2109186 - 2110175 | 34841.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
