Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_00850 | Not Available | Negative | 167706 - 168575 | 30827.1 |
| atp-dependent protease | RT97_00855 | Not Available | Positive | 170182 - 171720 | 54203.0 |
| serine/threonine protein kinase | RT97_00860 | Not Available | Negative | 171737 - 173818 | 72538.1 |
| type vi secretion system protein impm | RT97_00865 | Not Available | Negative | 173850 - 174563 | 25874.6 |
| membrane protein | RT97_00870 | Not Available | Negative | 174567 - 178202 | 134676.0 |
| hypothetical protein | RT97_00875 | Not Available | Negative | 178202 - 179572 | 49344.9 |
| type vi secretion protein | RT97_00880 | Not Available | Negative | 179581 - 180960 | 50838.1 |
| type vi secretion protein | RT97_00885 | Not Available | Negative | 181123 - 181641 | 19021.9 |
| hypothetical protein | RT97_00890 | Not Available | Positive | 181782 - 182183 | 14912.8 |
| signal peptide protein | RT97_00895 | Not Available | Positive | 182232 - 184277 | 70915.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
