Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna primase | RT97_09520 | Not Available | Positive | 2063887 - 2065878 | 72709.3 |
| rna polymerase sigma factor rpod | RT97_09525 | Not Available | Positive | 2066178 - 2068514 | 86575.9 |
| hypothetical protein | RT97_09530 | Not Available | Negative | 2068619 - 2069794 | 42895.2 |
| multidrug transporter cfla | RT97_09535 | Not Available | Positive | 2069935 - 2071170 | 44630.4 |
| membrane protein | RT97_09540 | Not Available | Positive | 2071345 - 2072487 | 41068.1 |
| molecular chaperone | RT97_09545 | Not Available | Positive | 2072526 - 2072846 | 11011.0 |
| abc transporter substrate-binding protein | RT97_09550 | Not Available | Negative | 2072860 - 2073846 | 34182.7 |
| coa-transferase | RT97_09555 | Not Available | Negative | 2073885 - 2075093 | 43191.1 |
| 3-hydroxy-3-methylglutaryl-coa lyase | RT97_09560 | Not Available | Negative | 2075090 - 2076055 | 33781.8 |
| lysr family transcriptional regulator | RT97_09565 | Not Available | Positive | 2076156 - 2077073 | 33204.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
