Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-hydroxyacid dehydrogenase | RT97_09470 | Not Available | Negative | 2055177 - 2056163 | 35073.2 |
| sodium:proton antiporter | RT97_09475 | Not Available | Negative | 2056175 - 2057596 | 50439.5 |
| nicotinate phosphoribosyltransferase | RT97_09480 | Not Available | Negative | 2057623 - 2058843 | 46561.4 |
| general stress protein csbd | RT97_09485 | Not Available | Positive | 2059025 - 2059258 | 9134.63 |
| hypothetical protein | RT97_09490 | Not Available | Positive | 2059326 - 2059733 | 14741.6 |
| thioesterase | RT97_09495 | Not Available | Negative | 2059810 - 2060256 | 16308.1 |
| deacetylase | RT97_09500 | Not Available | Negative | 2060253 - 2061188 | 34406.7 |
| phasin (pha-granule associated protein) | RT97_09505 | Not Available | Positive | 2061358 - 2061909 | 18748.0 |
| 3-hydroxy-2-methylbutyryl-coa dehydrogenase | RT97_09510 | Not Available | Positive | 2062142 - 2062900 | 25773.4 |
| ribonuclease r | RT97_09515 | Not Available | Negative | 2062848 - 2063801 | 34650.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
