Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane protein | RT97_09320 | Not Available | Positive | 2025933 - 2026634 | 24858.1 |
| 23s rrna methyltransferase | RT97_09325 | Not Available | Negative | 2026679 - 2028115 | 53027.9 |
| rna polymerase sigma factor | RT97_09330 | Not Available | Negative | 2028158 - 2029180 | 37570.7 |
| peptidase | RT97_09335 | Not Available | Negative | 2029185 - 2030093 | 31095.8 |
| protein-l-isoaspartate o-methyltransferase | RT97_09340 | Not Available | Negative | 2030105 - 2030878 | 27168.4 |
| stationary phase survival protein sure | RT97_09345 | Not Available | Negative | 2030880 - 2031638 | 27051.2 |
| nadph:quinone oxidoreductase | RT97_09350 | Not Available | Positive | 2031766 - 2032752 | 34335.8 |
| histidine biosynthesis protein hisie | RT97_09355 | Not Available | Negative | 2032834 - 2033178 | 12363.7 |
| Trna-his | Not Available | Not Available | Positive | 2033456 - 2033531 | Not Available |
| phosphatidylethanolamine-binding protein | RT97_09365 | Not Available | Negative | 2033608 - 2034240 | 21687.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
