Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pnbb | RT97_09160 | Not Available | Positive | 1999067 - 1999606 | 19406.7 |
| hypothetical protein | RT97_09165 | Not Available | Negative | 1999630 - 2000529 | 33433.1 |
| bugt protein | RT97_09170 | Not Available | Positive | 2000631 - 2001629 | 34655.0 |
| isopropylmalate isomerase | RT97_09175 | Not Available | Positive | 2001655 - 2003073 | 49978.5 |
| 3-isopropylmalate dehydratase | RT97_09180 | Not Available | Positive | 2003099 - 2003704 | 22159.4 |
| 3-isopropylmalate dehydrogenase | RT97_09185 | Not Available | Positive | 2003738 - 2004811 | 38008.3 |
| universal stress protein uspa | RT97_09190 | Not Available | Negative | 2004808 - 2005254 | 15758.2 |
| marr family transcriptional regulator | RT97_09195 | Not Available | Negative | 2005364 - 2005909 | 20196.3 |
| abc transporter substrate-binding protein | RT97_09200 | Not Available | Positive | 2006059 - 2007021 | 33845.2 |
| hypothetical protein | RT97_09215 | Not Available | Positive | 2008375 - 2009004 | 22902.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
