Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arylmalonate decarboxylase | RT97_08900 | Not Available | Positive | 1945189 - 1945890 | 24591.8 |
| 2-methylcitrate dehydratase | RT97_08905 | Not Available | Negative | 1945897 - 1947264 | 47966.0 |
| acyl-coa dehydrogenase | RT97_08910 | Not Available | Negative | 1947374 - 1948537 | 43158.8 |
| citrate synthase | RT97_08915 | Not Available | Negative | 1948552 - 1949334 | 27736.8 |
| acyl-coa dehydrogenase | RT97_08920 | Not Available | Positive | 1949441 - 1951759 | 82869.3 |
| abc transporter substrate-binding protein | RT97_08925 | Not Available | Positive | 1951803 - 1952804 | 34984.5 |
| o-succinylbenzoate--coa ligase | RT97_08930 | Not Available | Positive | 1952808 - 1954307 | 53098.9 |
| hypothetical protein | RT97_08935 | Not Available | Positive | 1954439 - 1954618 | 6484.62 |
| hypothetical protein | RT97_08940 | Not Available | Positive | 1954791 - 1955468 | 23931.8 |
| dna topoisomerase | RT97_08945 | Not Available | Negative | 1955414 - 1956652 | 45506.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
