Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| valine--trna ligase | RT97_08850 | Not Available | Negative | 1933154 - 1936033 | 107851.0 |
| hypothetical protein | RT97_08855 | Not Available | Positive | 1936141 - 1936926 | 29248.1 |
| proline dioxygenase | RT97_08860 | Not Available | Positive | 1937082 - 1937924 | 30842.9 |
| alpha/beta hydrolase | RT97_08865 | Not Available | Positive | 1937935 - 1938837 | 32224.5 |
| nadph-dependent 7-cyano-7-deazaguanine reductase | RT97_08870 | Not Available | Positive | 1938834 - 1939709 | 32757.6 |
| 3-hydroxyacyl-coa dehydrogenase | RT97_08875 | Not Available | Positive | 1939829 - 1940734 | 31814.0 |
| lysr family transcriptional regulator | RT97_08880 | Not Available | Positive | 1940929 - 1941822 | 32254.8 |
| lysr family transcriptional regulator | RT97_08885 | Not Available | Positive | 1941995 - 1942882 | 32049.5 |
| mandelate racemase | RT97_08890 | Not Available | Positive | 1942993 - 1944147 | 41821.6 |
| abc transporter substrate-binding protein | RT97_08895 | Not Available | Positive | 1944183 - 1945187 | 34339.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
