Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | RT97_08800 | Not Available | Positive | 1925421 - 1926125 | 25096.9 |
| abc transporter substrate-binding protein | RT97_08805 | Not Available | Negative | 1926226 - 1927200 | 33907.0 |
| cdp-6-deoxy-delta-3,4-glucoseen reductase | RT97_08810 | Not Available | Negative | 1927237 - 1928301 | 38481.2 |
| nad-dependent dehydratase | RT97_08815 | Not Available | Positive | 1928358 - 1929290 | 34350.4 |
| hypothetical protein | RT97_08820 | Not Available | Negative | 1929417 - 1930064 | 23239.9 |
| Trna-leu | Not Available | Not Available | Positive | 1930131 - 1930215 | Not Available |
| cysteine synthase | RT97_08830 | Not Available | Positive | 1930258 - 1931160 | 32432.0 |
| adp-ribose pyrophosphatase | RT97_08835 | Not Available | Positive | 1931301 - 1931879 | 21598.8 |
| hypothetical protein | RT97_08840 | Not Available | Positive | 1931869 - 1932096 | 8416.18 |
| utp--glucose-1-phosphate uridylyltransferase | RT97_08845 | Not Available | Negative | 1932163 - 1933053 | 32230.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
