Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c assembly protein | RT97_08450 | Not Available | Positive | 1847262 - 1848077 | 28971.1 |
| hypothetical protein | RT97_08455 | Not Available | Positive | 1848074 - 1848346 | 9906.1 |
| histidine kinase | RT97_08460 | Not Available | Positive | 1848363 - 1850060 | 61473.3 |
| fis family transcriptional regulator | RT97_08465 | Not Available | Positive | 1850077 - 1851636 | 55578.3 |
| anhydro-n-acetylmuramyl-tripeptide amidase | RT97_08470 | Not Available | Positive | 1851623 - 1852246 | 23090.8 |
| ribonucleotide-diphosphate reductase subunit alpha | RT97_08475 | Not Available | Positive | 1852597 - 1855512 | 108151.0 |
| ribonucleotide-diphosphate reductase subunit beta | RT97_08480 | Not Available | Positive | 1855725 - 1856963 | 46953.0 |
| histone | RT97_08485 | Not Available | Positive | 1857160 - 1857690 | 17141.8 |
| sugar kinase | RT97_08490 | Not Available | Negative | 1857772 - 1858674 | 32297.7 |
| hypothetical protein | RT97_08495 | Not Available | Negative | 1858737 - 1860176 | 50898.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
