Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| superoxide dismutase | RT97_07875 | Not Available | Positive | 1721465 - 1722046 | 21410.3 |
| hypothetical protein | RT97_07880 | Not Available | Negative | 1722126 - 1722587 | 17333.2 |
| signal peptide protein | RT97_07885 | Not Available | Negative | 1722683 - 1722871 | 6221.71 |
| membrane protein tola | RT97_07890 | Not Available | Negative | 1723019 - 1723342 | 10844.8 |
| isocitrate dehydrogenase | RT97_07895 | Not Available | Positive | 1723561 - 1724820 | 45839.3 |
| hypothetical protein | RT97_07900 | Not Available | Negative | 1726560 - 1726760 | 7621.72 |
| clp protease clps | RT97_07905 | Not Available | Positive | 1728660 - 1729019 | 13142.9 |
| clp protease clpx | RT97_07910 | Not Available | Positive | 1729087 - 1731408 | 84640.8 |
| cardiolipin synthetase | RT97_07915 | Not Available | Positive | 1731524 - 1732969 | 53347.7 |
| exonuclease i | RT97_07920 | Not Available | Positive | 1732970 - 1734409 | 54191.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
